Supplement 1. The WinBUGS code for analysis of movement paths.
Juan Manuel Morales
Daniel T. Haydon
Jacqui Frair
Kent E. Holsinger
John M. Fryxell
10.6084/m9.figshare.3523667.v1
https://wiley.figshare.com/articles/dataset/Supplement_1_The_WinBUGS_code_for_analysis_of_movement_paths_/3523667
<h2>File List</h2><blockquote>
<table>
<tbody><tr>
<td><a href="single.txt">singlet.txt</a></td>
<td> </td>
<td>WinBUGS
code for model "Single", a single Random Walk. Size 2 KB</td>
</tr>
<tr>
<td><a href="double.txt">double.txt</a></td>
<td> </td>
<td>WinBUGS
code for model "Double", two Random Walks. Size 2 KB</td>
</tr>
<tr>
<td><a href="double_covar.txt">double_covar.txt</a></td>
<td> </td>
<td>WinBUGS
code for model "Double with Covariates". Size 3 KB</td>
</tr>
<tr>
<td><a href="double_switch.txt">double_switch.txt</a></td>
<td> </td>
<td>WinBUGS
code for model "Double Switch". Size 3 KB</td>
</tr>
<tr>
<td><a href="switch_covar.txt">switch_covar.txt</a></td>
<td> </td>
<td>WinBUGS
code for model "Switch with Covariates". Size 3 KB</td>
</tr>
<tr>
<td><a href="switch_constrained.txt">switch_constrained.txt</a></td>
<td> </td>
<td>WinBUGS
code for model "Switch Constrained". Size 3 KB</td>
</tr>
<tr>
<td><a href="triple_switch.txt">triple_switch.txt</a></td>
<td> </td>
<td>WinBUGS
code for model "Triple Switch". Size 2 KB</td>
</tr>
<tr>
<td><a href="HierSwitch.txt">HierSwitch.txt</a></td>
<td> </td>
<td>WinBUGS
code for hierarchical version of Switch model. Size 3 KB</td>
</tr>
<tr>
<td><a href="simulasw.m">simulasw.m</a></td>
<td> </td>
<td>Matlab
code for movement simulation. Size 5 KB</td>
</tr>
<tr>
<td><a href="PPcheck.m">PPcheck.m</a></td>
<td> </td>
<td>Matlab
code for posterior predictive check. Size
7 KB</td>
</tr>
<tr>
<td><a href="elk_data.txt">elk_data.txt</a></td>
<td> </td>
<td>Movement
data for four elk. Size
87 KB</td>
</tr>
<tr>
<td><a href="simulated.txt">simulated.txt</a></td>
<td> </td>
<td>Movement
data simulated with simulasw.m. Size
46 KB</td>
</tr>
<tr>
<td> </td>
<td> </td>
<td> </td>
</tr>
<tr>
<td><a href="allfiles.zip">allfiles.zip</a></td>
<td> </td>
<td>All files together. Size
58 KB</td>
</tr>
</tbody></table>
</blockquote><h2>Description</h2><p>WinBUGS code was run on version
1.4 available at <a href="http://www.mrc-bsu.cam.ac.uk/bugs/winbugs/contents.shtml">http://www.mrc-bsu.cam.ac.uk/bugs/winbugs/contents.shtml</a>.
We use the following generic script:<br>
</p>
<p> display('log')<br>
check('directory/model_name.txt')<br>
data('directory/data_file.txt')<br>
compile(4)<br>
inits(1, 'directory/filename1_ini.txt')<br>
inits(2, 'switch/filename2_ini.txt')<br>
inits(3, 'switch/filename3_ini.txt')<br>
inits(4, 'switch/filename4_ini.txt')<br>
gen.inits()<br>
set(parameter_names)<br>
over.relax('yes')<br>
update(50000)<br>
stats(*)<br>
quantiles(*)<br>
coda(*,switch/output)<br>
<br>
</p>
<p>See the WinBUGS manual for details
on how to run the analysis. Matlab code was run on student version 6.5. </p>
<p>
</p>
2016-08-05 00:55:38
switching behavior
redistribution kernel
wapiti
Cervus elaphus
GPS collars
movement models
WinBUGS
Bayesian
spatial scale
relocation data
landscape
random walks
Environmental Science
Ecology