10.6084/m9.figshare.3561168.v1
L. Chalmandrier
L.
Chalmandrier
T. Münkemüller
T.
Münkemüller
S. Lavergne
S.
Lavergne
W. Thuiller
W.
Thuiller
Supplement 1. R scripts for performing the α, β, γ decomposition.
Wiley
2016
alpine communities
phylogenetic diversity
functional diversity
Hill numbers
community assembly
β-diversity
Environmental Science
Ecology
2016-08-10 08:10:11
Dataset
https://wiley.figshare.com/articles/dataset/Supplement_1_R_scripts_for_performing_the__decomposition_/3561168
<h2>File List</h2><div>
<p><a href="abgFunctions.R">abgFunctions.R</a> (MD5: cb64e90444f8ecfa9bd42d7e63325440) Functions necessary to perform the α, β, γ-diversity decomposition </p>
<p><a href="example.R">example.R</a> (MD5: 8e4fa85f9edfa1005b42200e2d6a14f1) Example of analysis with the phylocom dataset (R-package <i>picante</i>)</p>
</div><h2>Description</h2><div>
<p>The R-scripts are designed to assist the reader to use the methods of the article. The example shows how to use them to calculate the α, β, γ-diversity of a meta-community either through Chao's diversity index or Leinster & Cobbold. We also provide the functions to calculate inter-community pairwise distance matrices. </p>
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