Supplement 1. Source code for parameter estimation.

Name: Supplement 1. Source code for parameter estimation.
Published: 2016-08-09T09:32:19+00:00
License: https://creativecommons.org/publicdomain/zero/1.0/
Keywords: diatoms, predictive power, Bayesian inference, species community, species distribution model, statistical modeling, hierarchical modeling, Environmental Science, Ecology

dataset

posted on 2016-08-09, 09:32 authored by Otso Ovaskainen, Janne Soininen

File List

data_abundance.csv

environment.csv

Diatom_data_MCMC.nb

Simulated_data_MCMC.nb

Diatom_data_MCMC.txt

Simulated_data_MCMC.txt

Description

The MCMC sampling was implemented with Mathematica 7.0.1. The code Diatom_data_MCMC.nb can be used to apply the estimation scheme to the real diatom data, given in files data_abundance.csv and environment.csv. The code Simulated_data_MCMC.nb can be used to generate simulated data and to fit the model to the simulated data. The files Diatom_data_MCMC.txt and Simulated_data_MCMC.txt include the two Mathematica notebooks in text format.