Supplement 1. Supertree phylogeny files and taxonomic list.

Name: Supplement 1. Supertree phylogeny files and taxonomic list.
Published: 2016-08-05T03:16:18+00:00
License: https://creativecommons.org/publicdomain/zero/1.0/
Keywords: community phylogenetic structure, Borneo, phylodiversity, density dependence, seedlings, plant pathogen infection, Environmental Science, Ecology

dataset

posted on 2016-08-05, 03:16 authored by Campbell O. Webb, Gregory S. Gilbert, Michael J. Donoghue

File List

sdlphy_phylo.new - Supertree in Newick format.

sdlphy_phylo.nex - Supertree in Nexus format.

sdlphy_taxa.txt - Table of taxa.

Description

sdlphy_phylo.new, sdlphy_phylo.nex: These files contain the supertree (in different formats) that was used to generate the results in this paper. The tree was assembled using Phylomatic megatree R20040402 (backbone derived from Peter Stevens' APweb), and branch lengths were adjusted using the BLADJ algorithm of Phylocom (Webb, Ackerly, Kembel). The tree contains internal node names, and follows standard Newick and Nexus conventions (see Maddison et al. 1997. Syst. Bio. 46:590–621). The Nexus tree opens in MacClade v4.05 and Mesquite v1.05.

sdlphy_taxa.txt: Table of the codes used in the phylogeny files. TAB-delimined plain text; UNIX line endings; first row contains column names.