Supplement 1. Cell-specific bacterial production and respiration data.

Name: Supplement 1. Cell-specific bacterial production and respiration data.
Published: 2016-08-05T04:52:33+00:00
License: https://creativecommons.org/publicdomain/zero/1.0/
Keywords: bacterial production, bacterial respiration, bacterial growth efficiency, metabolic theory, carbon cycling, Environmental Science, Ecology

dataset

posted on 2016-08-05, 04:52 authored by Ángel López-Urrutia, Xosé Anxelu G. Morán

File List

BP.csv -- cell specific bacterial production rates compiled in our study

BR.csv -- cell specific bacterial respiration rates compiled in our study

Description

The BP.csv file is a comma-separated ascii file. The file contains cell specific bacterial production rates compiled in our study. Data were extracted from tables or digitized from figures reported in the original papers.
Column definitions:

1 = BPi, cell-specific production in fg C per cell and per day

2 = Chl, chlorophyll concentration in mg per cubic meter

3 = T, Temperature in degrees celsius

4 = Sources, Data source

Missing values are represented as "-9999".

Data sources:

[1] Arrieta, J. M., M. G. Weinbauer, C. Lute, and G. J. Herndl. 2004. Response of bacterioplankton to iron fertilization in the Southern Ocean. Limnol. Oceanogr. 49:799808.

[2] Bode, A., S. Barquero, M. Varela, J. G. Braun, and D. de Armas. 2001. Pelagic bacteria and phytoplankton in oceanic waters near the Canary Islands in summer. Mar. Ecol. Prog. Ser. 209:117.

[3] Ducklow, H., C. Carlson, and W. Smith. 1999. Bacterial growth in experimental plankton assemblages and seawater cultures from the Phaeocystis antarctica bloom in the Ross Sea, Antarctica. Aquat. Microb. Ecol. 19:215227.

[4] Ducklow, H. W. 2004. U.S. JGOFS Synthesis and Modeling Project Data. U.S.JGOFS. iPub http://usjgofs.whoi.edu/jg/serv/smpr esults/bacteria.html0.

[5] González, N., R. Anadón, and L. Viesca. 2003. Carbon flux through the microbial community in a temperate sea during summer: role of bacterial metabolism. Aquat. Microb. Ecol. 33:117126.

[6] Lemée, R., E. Rochelle-Newall, F. Van Wambeke, M. D. Pizay, P. Rinaldi, and J. P. Gattuso. 2002. Seasonal variation of bacterial production, respiration and growth efficiency in the open NW Mediterranean Sea. Aquat. Microb. Ecol. 29:227237.

[7] Longnecker, K., B. F. Sherr, and E. B. Sherr. 2005. Activity and phylogenetic diversity of bacterial cells with high and low nucleic acid content and electron transport system activity in an upwelling ecosystem. Appl. Environ. Microbiol. 71:77377749.

[8] Møller, E. F., and T. G. Nielsen. 2000. Plankton community structure and carbon cycling off the western coast of Greenland, with emphasis on sources of DOM for the bacterial community. Mar. Ecol. Prog. Ser. 22:1325.

[9] Morán, X. A. G., E. Fernández, and V. Pérez. 2004. Size-fractionated primary production, bacterial production and net community production in subtropical and tropical domains of the oligotrophic NE Atlantic in autumn. Mar. Ecol. Prog. Ser. 274:1729.

[10] Morán, X. A. G., M. Sebastián, C. Pedrós-Alió, and M. Estrada. 2006. Response of Southern Ocean phytoplankton and bacterioplankton production to short-term experimental warming. Limnol. Oceanogr. 51:17911800.

[11] Morán, X. A. G., J. M. Gasol, C. Pedrós-Alió, and M. Estrada. 2001. Dissolved and particulate primary production and bacterial production in offshore Antarctic waters during austral summer: Coupled or uncoupled? Mar. Ecol. Prog. Ser. 222:2539.

[12] Morán, X. A. G., I. Taupier-Letage, E. Vázquez-Domínguez, S. Ruiz, L. Arin, P. Raimbault, and M. Estrada. 2001. Physical-biological coupling in the Algerian Basin (SW Mediterranean): Influence of mesoscale instabilities on the biomass and production of phytoplankton and bacterioplankton. Deep-Sea Res. 48:405437.

[13] Morán, X. A. G., and M. Estrada. 2002. Phytoplanktonic DOC and POC production in the Bransfield and Gerlache Straits as derived from kinetic experiments of ¹⁴C incorporation. Deep-Sea Res. 49:45.

[14] Morán, X. A. G., J. M. Gasol, C. Pedrós-Alió, and M. Estrada. 2002. Partitioning of phytoplanktonic organic carbon production and bacterial production along a coastal-offshore gradient in the NE Atlantic during different hydrographic regimes. Aquat. Microb. Ecol. 29:239252.

[15] Morán, X. A. G., M. Estrada, J. M. Gasol, and C. Pedrós-Alió. 2002. Dissolved primary production and the strength of phytoplankton-bacterioplankton coupling in contrasting marine regions. Microb. Ecol. 44:217223.

[16] Pedrós-Alió, C., D. Vaqué, N. Guixa-Boixereu, and J. M. Gasol. 2002. Prokaryotic plankton biomass and heterotrophic production in western Antarctic waters during the 1995-1996 Austral summer. Deep-Sea Res. II 49:805825.

[17] Pérez, V., E. Fernández, E. Marañón, P. Serret, R. Varela, A. Bode, M. Varela, M. M. Varela, X. A. G. Morán, E. M. S. Woodward, V. Kitidis, and C. García-Soto. 2005. Latitudinal distribution of microbial plankton abundance, production, and respiration in the Equatorial Atlantic in Autumn 2000. Deep-Sea Res. 52:861880.

[18] Reinthaler, T., and G. J. Herndl. 2005. Seasonal dynamics of bacterial growth efficiencies in relation to phytoplankton in the southern North Sea. Aquat. Microb. Ecol. 39:716.

[19] Sherr, E. B., B. F. Sherr, and T. J. Cowles. 2001. Mesoscale variability in bacterial activity in the Northeast Pacific Ocean off Oregon, USA. Aquat. Microb. Ecol. 25:2130.

[20] Sherr, B. F., and E. B. Sherr. 2003. Community respiration/production and bacterial activity in the upper water column of the central Arctic Ocean. Deep-Sea Res. 50:529542.

[21] Staroscik, A. M., and D. C. Smith. 2004. Seasonal patterns in bacterioplankton abundance and production in Narragansett Bay, Rhode Island, USA. Aquat. Microb. Ecol. 35:275282.

[22] Valencia, J., J. Abalde, A. Bode, A. Cid, E. Fernández, N. González, J. Lorenzo, E. Teira, and M. Varela. 2003. Variations in planktonic bacterial biomass and production, and phytoplankton blooms off A Coruña (NW Spain). Scient. Mar. 67:143157.

[23] Varela, M. M., A. Bode, N. González, C. Rodríguez, and M. Varela. 2003. Fate of organic matter in the Ria de Ferrol (Galicia, NW Spain): uptake by pelagic bacteria vs. particle sedimentation. Acta Oecol. 24:S77S86.

The BR.csv file is a comma-separated ascii file. The file contains cell specific bacterial respiration rates compiled in our study. Data were extracted from tables or digitized from figures reported in the original papers.

Column definitions:

1 = BRi, cell-specific respiration in fg C per cell and per day

2 = Chl, chlorophyll concentration in mg per cubic meter

3 = T, Temperature in degrees celsius

4 = Sources, Data source

Missing values are represented as "-9999".

Data sources:

[1] Biddanda, B., S. Opsahl, and R. Benner. 1994. Plankton respiration and carbon flux through bacterioplankton on the louisiana shelf. Limnol. Oceanogr. 39:12591275.

[2] Briand, E., O. Pringault, S. Jacquet, and J. P. Torretón. 2004. The use of oxygen microprobes to measure bacterial respiration for determining bacterioplankton growth efficiency. Limnol Oceanog Methods 2:406416.

[3] Carlson, C. A., N. R. Bates, H. W. Ducklow, and D. A. Hansell. 1999. Estimation of bacterial respiration and growth efficiency in the Ross Sea, Antarctica. Aquat. Microb. Ecol. 19:229244.

[4] González, N., R. Anadón, and L. Viesca. 2003. Carbon flux through the microbial community in a temperate sea during summer: role of bacterial metabolism. Aquat. Microb. Ecol. 33:117126.

[5] Kahler, P., P. K. Bjornsen, K. Lochte, and A. Antia. 1997. Dissolved organic matter and its utilization by bacteria during spring in the Southern Ocean. Deep-Sea Res. II 44:341353.

[6] Lemée, R., E. Rochelle-Newall, F. Van Wambeke, M. D. Pizay, P. Rinaldi, and J. P. Gattuso. 2002. Seasonal variation of bacterial production, respiration and growth efficiency in the open NW Mediterranean Sea. Aquat. Microb. Ecol. 29:227237.

[7] Navarro, N., S. Agustí, and C. M. Duarte. 2004. Plankton metabolism and dissolved organic carbon use in the Bay of Palma, NW Mediterranean sea. Aquat. Microb. Ecol. 37:4754.

[8] Pomeroy, L. R., J. E. Sheldon, W. M. Sheldon, and F. Peters. 1995. Limits to growth and respiration of bacterioplankton in the gulf-of-mexico. Mar. Ecol. Prog. Ser. 117:259268.

[9] Preen, K., and D. L. Kirchman. 2004. Microbial respiration and production in the Delaware Estuary. Aquat. Microb. Ecol. 37:109119.

[10] Reinthaler, T., and G. J. Herndl. 2005. Seasonal dynamics of bacterial growth efficiencies in relation to phytoplankton in the southern North Sea. Aquat. Microb. Ecol. 39:716.