Otso Ovaskainen, Jenni Hottola, and Juha Siitonen. 2010. Modeling species co-occurrence by multivariate logistic regression generates new hypotheses on fungal interactions. Ecology 20:2514–2521.

Supplement

Source code for parameter estimation.
Ecological Archives E091-184-S1.

Copyright

Authors
File list (downloads)
Description

Author(s)

Otso Ovaskainen
Department of Biosciences
University of Helsinki
Viikinkaari 1, FI-00014
Finland
E-mail: otso.ovaskainen@helsinki.fi

Jenni Hottola
Department of Biosciences
University of Helsinki
Viikinkaari 1, FI-00014
Finland, and
Finnish Forest Research Institute
Vantaa Research Unit
P.O. Box 18
FI-01301 Vantaa, Finland

Juha Siitonen
Finnish Forest Research Institute
Vantaa Research Unit
P.O. Box 18
FI-01301 Vantaa, Finland

File list

example_data.txt

MCMC.nb

MCMC.txt

Description

The MCMC sampling was implemented with Mathematica 7.0.1. The code MCMC.nb can be used to apply the estimation scheme to the file example_data.

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