Jonas Knape, Panagiotis Besbeas, Perry de Valpine. 2013. Using uncertainty estimates in analyses of population time series. Ecology 94:2097–2107. http://dx.doi.org/10.1890/12-0712.1

Supplement

Matlab functions for fitting the models in Scenario 3.
Ecological Archives E094-191-S1.

Copyright

Authors
File list (downloads)
Description

Author(s)

Jonas Knape
University of California, Berkeley
Current address:
Department of Ecology
Box 7044
S-750 07, Uppsala, Sweden
E-mail: jonas.knape@slu.se

Panagiotis Besbeas
Athens University of Economics and Business
Department of Statistics
Athens 104 34 Greece
E-mail: p.t.besbeas@kent.ac.uk

Perry de Valpine
University of California, Berkeley
Environmental Science, Policy and Management
130 Mulford Hall #3114, Berkeley, CA 94720 USA
E-mail: pdevalpine@berkeley.edu

File list

fitModel.m (MD5: dcf2f5a898ddf08cc71f14dbafabd124)

fullNLL.m (MD5: 514a14611653186dabcf5bff28bfa50f)

kalman.m (MD5: d1f7404cbf0f8bc9ecce730023f2a891)

Description

fitModel.m fits a data set simulated under Scenario 3.
fullNLL.m computes the likelihood for the full ML method.
kalman.m is an implementation of the kalman filter used by fitModel.