Ecological Archives E095-137-A7
J. Nevil Amos, Katherine A. Harrisson, James Q. Radford, Matt White, Graeme Newell, Ralph Mac Nally, Paul Sunnucks, Alexandra Pavlova. 2014. Species- and sex-specific connectivity effects of habitat fragmentation in a suite of woodland birds. Ecology 95:1556–1568. http://dx.doi.org/10.1890/13-1328.1
Appendix G. Summary of causal modeling framework results for FST (Table G1) and individual genetic distances (Table G2). Species abbreviations: BT- Brown Treecreeper, EYR- Eastern Yellow Robin, FH-Fuscous Honeyeater, GST- Grey Shrike-thrush, SPP- Spotted Pardalote, STP- Striated Pardalote, SFW- Superb Fairy-wren, WB- Weebill, WPH- White-plumed Honeyeater, YTH- Yellow-tufted Honeyeater.
Table G1. Summary of causal modeling framework results for FST. Where a single best IBD or IBR model was selected it is listed. Where a causal modelling resulted in an indeterminate result, both IBD and the best IBR models are listed. Mantel and partial Mantel correlation (r) and P values are for the tests of IBR models with highest correlation (Mantel r) on marginal tests (Appendix F, Table F1). Significant results are in bold.
Species |
Sex |
Area |
N |
N |
Inference |
Best model(s) |
Marginal Mantel tests |
Partial Mantel tests |
||||||
IBD |
IBR |
IBD/IBR partialed out |
IBR/IBD partialed out |
|||||||||||
|
|
|
|
|
|
|
r |
P |
r |
P |
r |
P |
r |
P |
BT |
ALL |
Study |
459 |
41 |
IBD/R |
IBD/EO_100 |
0.269 |
<0.001 |
0.263 |
<0.001 |
0.089 |
0.241 |
-0.066 |
0.684 |
East |
139 |
15 |
- |
- |
0.124 |
0.124 |
0.221 |
0.109 |
|
|
|
|
||
|
|
West |
315 |
25 |
IBD |
IBD |
0.129 |
0.024 |
0.123 |
0.076 |
0.041 |
0.428 |
0.016 |
0.422 |
EYR |
ALL |
Study |
48 |
9 |
IBR |
EO_5000 |
0.181 |
0.136 |
0.732 |
0.028 |
-0.035 |
0.564 |
0.722 |
0.086 |
|
|
East |
26 |
5 |
- |
- |
0.278 |
0.320 |
0.379 |
0.351 |
|
|
|
|
FH |
ALL |
Study |
401 |
25 |
- |
- |
0.069 |
0.115 |
0.230 |
0.058 |
|
|
|
|
East |
213 |
12 |
- |
- |
0.144 |
0.202 |
0.128 |
0.235 |
|
|
|
|
||
|
|
West |
146 |
12 |
- |
- |
0.038 |
0.355 |
0.179 |
0.174 |
|
|
|
|
SFW |
ALL |
Study |
135 |
16 |
IBR |
HAB_1_10 |
0.275 |
0.012 |
0.567 |
0.001 |
-0.459 |
0.985 |
0.649 |
0.004 |
East |
81 |
9 |
IBR |
TREE_1_100 |
0.363 |
0.095 |
0.739 |
0.006 |
-0.161 |
0.697 |
0.700 |
0.005 |
||
|
|
West |
54 |
7 |
IBD/R |
IBD/HAB_1_10 |
0.318 |
0.012 |
0.610 |
0.034 |
-0.094 |
0.560 |
0.554 |
0.090 |
STP |
ALL |
Study |
50 |
8 |
- |
- |
0.305 |
0.095 |
0.312 |
0.124 |
|
|
|
|
|
|
East |
24 |
5 |
IBD |
IBD |
0.702 |
0.032 |
0.832 |
0.050 |
0.010 |
0.349 |
0.628 |
0.047 |
WPH |
ALL |
Study |
248 |
27 |
- |
- |
-0.016 |
0.532 |
-0.089 |
0.791 |
|
|
|
|
East |
67 |
8 |
- |
- |
0.291 |
0.069 |
0.202 |
0.154 |
|
|
|
|
||
|
|
West |
174 |
18 |
- |
- |
0.212 |
0.053 |
0.009 |
0.488 |
|
|
|
|
YTH |
ALL |
Study |
458 |
27 |
IBR |
TREE_1_100 |
-0.022 |
0.597 |
0.206 |
0.020 |
-0.211 |
0.980 |
0.290 |
0.004 |
East |
79 |
6 |
- |
- |
-0.405 |
0.966 |
-0.018 |
0.418 |
|
|
|
|
||
|
|
West |
369 |
20 |
IBR |
TREE_1_100 |
-0.012 |
0.561 |
0.34 |
0.009 |
-0.161 |
0.983 |
0.372 |
0.009 |
Table G2. Summary of Causal Modelling framework results for individual genotypic distance. Where a single best IBD or IBR model was selected it is listed. Where a causal modeling resulted in an indeterminate result, both IBD and the best IBR models are listed. Mantel and partial Mantel correlation (r) and P values are for the tests of IBR models with highest correlation (Mantel r) on marginal tests (Appendix F, Table F2). Significant results are in bold text.
Species |
Sex |
Area |
N |
N
|
Inference |
Best model(s) |
Marginal Mantel tests |
Partial Mantel tests |
||||||
IBD |
IBR |
IBD conditioned on IBR |
IBR conditioned on IBD |
|||||||||||
r |
P |
r |
P |
r |
P |
r |
P |
|||||||
BT |
ALL |
Study |
474 |
48 |
IBD/R |
IBD/HAB_1_2 |
0.142 |
<0.001 |
0.143 |
<0.001 |
0.008 |
0.360 |
0.017 |
0.213 |
East |
148 |
19 |
IBD/R |
IBD/EO_100 |
0.147 |
<0.001 |
0.144 |
<0.001 |
0.051 |
0.083 |
-0.042 |
0.879 |
||
West |
321 |
28 |
IBR |
HAB_1_10 |
0.097 |
<0.001 |
0.115 |
<0.001 |
0.012 |
0.341 |
0.064 |
0.031 |
||
|
F |
Study |
203 |
46 |
IBR |
EO_5000 |
0.134 |
<0.001 |
0.179 |
<0.001 |
-0.010 |
0.615 |
0.120 |
0.002 |
|
|
East |
58 |
19 |
- |
- |
0.042 |
0.112 |
0.046 |
0.127 |
|
|
|
|
|
|
West |
143 |
26 |
IBR |
EO_5000 |
0.062 |
<0.001 |
0.157 |
0.001 |
-0.020 |
0.746 |
0.146 |
0.007 |
|
M |
Study |
271 |
47 |
IBD |
IBD |
0.162 |
<0.001 |
0.157 |
<0.001 |
0.077 |
0.007 |
-0.066 |
0.985 |
|
|
East |
90 |
18 |
IBD |
IBD |
0.246 |
<0.001 |
0.242 |
<0.001 |
0.099 |
0.015 |
-0.085 |
0.968 |
|
|
West |
178 |
28 |
IBD/R |
IBD/EO_100 |
0.135 |
<0.001 |
0.135 |
<0.001 |
0.003 |
0.486 |
0.010 |
0.407 |
EYR |
ALL |
Study |
102 |
32 |
IBD/R |
IBD/EO_100 |
0.052 |
0.010 |
0.045 |
0.033 |
0.062 |
0.120 |
-0.056 |
0.851 |
East |
53 |
15 |
- |
- |
0.015 |
0.405 |
0.009 |
0.441 |
|
|
|
|
||
West |
46 |
16 |
IBD |
IBD |
0.093 |
0.006 |
0.068 |
0.028 |
0.157 |
0.031 |
-0.144 |
0.956 |
||
|
F |
Study |
39 |
25 |
- |
- |
0.022 |
0.296 |
0.008 |
0.416 |
|
|
|
|
|
|
East |
19 |
12 |
- |
- |
0.036 |
0.384 |
0.135 |
0.170 |
|
|
|
|
|
|
West |
20 |
13 |
- |
- |
0.011 |
0.430 |
-0.020 |
0.611 |
|
|
|
|
|
M |
Study |
63 |
30 |
IBD/R |
IBD/EO_100 |
0.063 |
0.028 |
0.061 |
0.048 |
0.023 |
0.388 |
-0.015 |
0.569 |
|
|
East |
34 |
14 |
- |
- |
-0.005 |
0.533 |
-0.013 |
0.565 |
|
|
|
|
|
|
West |
26 |
15 |
IBD/R |
IBD/EO_100 |
0.136 |
0.012 |
0.110 |
0.036 |
0.148 |
0.112 |
-0.126 |
0.846 |
FH |
ALL |
Study |
421 |
33 |
- |
- |
0.004 |
0.329 |
0.007 |
0.374 |
|
|
|
|
East |
217 |
14 |
- |
- |
-0.008 |
0.720 |
0.003 |
0.458 |
|
|
|
|
||
West |
162 |
18 |
- |
- |
0.036 |
0.053 |
0.037 |
0.117 |
|
|
|
|
||
|
F |
Study |
169 |
31 |
- |
- |
0.000 |
0.483 |
-0.007 |
0.610 |
|
|
|
|
|
|
East |
91 |
14 |
- |
- |
0.010 |
0.364 |
0.005 |
0.449 |
|
|
|
|
|
|
West |
62 |
16 |
- |
- |
-0.001 |
0.516 |
-0.007 |
0.545 |
|
|
|
|
|
M |
Study |
252 |
31 |
- |
- |
0.006 |
0.318 |
0.035 |
0.12 |
|
|
|
|
|
|
East |
126 |
13 |
- |
- |
0.005 |
0.360 |
0.039 |
0.191 |
|
|
|
|
|
|
West |
100 |
17 |
- |
- |
0.042 |
0.056 |
0.055 |
0.162 |
|
|
|
|
GST |
ALL |
Study |
59 |
32 |
IBD |
IBD |
0.058 |
0.044 |
0.056 |
0.057 |
0.039 |
0.296 |
-0.035 |
0.677 |
East |
26 |
14 |
- |
- |
-0.005 |
0.519 |
0.043 |
0.310 |
|
|
|
|
||
West |
32 |
17 |
- |
- |
0.039 |
0.188 |
0.029 |
0.267 |
|
|
|
|
||
|
F |
Study |
23 |
17 |
IBD/R |
IBD/EO_100 |
0.153 |
0.018 |
0.150 |
0.017 |
0.045 |
0.309 |
-0.036 |
0.657 |
|
|
East |
10 |
8 |
- |
- |
0.167 |
0.195 |
0.182 |
0.217 |
|
|
|
|
|
|
West |
13 |
9 |
- |
- |
0.161 |
0.123 |
0.162 |
0.135 |
|
|
|
|
|
M |
Study |
36 |
26 |
IBD |
IBD |
0.097 |
0.039 |
0.090 |
0.057 |
0.096 |
0.180 |
-0.089 |
0.799 |
|
|
East |
16 |
12 |
- |
- |
-0.029 |
0.604 |
0.006 |
0.446 |
|
|
|
|
|
|
West |
19 |
13 |
- |
- |
0.061 |
0.268 |
0.038 |
0.346 |
0.254 |
0.049 |
-0.249 |
0.940 |
SFW |
ALL |
Study |
176 |
33 |
IBR |
TREE_1_10 |
0.158 |
<0.001 |
0.217 |
<0.001 |
-0.019 |
0.710 |
0.152 |
<0.001 |
East |
108 |
20 |
IBR |
TREE_1_100 |
0.108 |
<0.001 |
0.168 |
<0.001 |
0.007 |
0.438 |
0.129 |
0.012 |
||
West |
67 |
12 |
IBR |
TREE_1_2 |
0.268 |
<0.001 |
0.285 |
<0.001 |
-0.010 |
0.565 |
0.101 |
0.045 |
||
|
F |
Study |
81 |
29 |
IBD/R |
IBD/EO_100 |
0.111 |
<0.001 |
0.109 |
<0.001 |
0.033 |
0.286 |
-0.025 |
0.674 |
|
|
East |
55 |
19 |
IBD/R |
IBD/HAB_1_2 |
0.105 |
<0.001 |
0.104 |
<0.001 |
0.012 |
0.440 |
0.006 |
0.464 |
|
|
West |
26 |
10 |
IBD/R |
IBD/EO_100 |
0.212 |
0.001 |
0.211 |
<0.001 |
0.027 |
0.391 |
-0.015 |
0.556 |
|
M |
Study |
95 |
31 |
IBR |
TREE_1_100 |
0.195 |
<0.001 |
0.317 |
<0.001 |
-0.010 |
0.606 |
0.255 |
<0.001 |
|
|
East |
53 |
18 |
IBR |
TREE_1_100 |
0.102 |
<0.001 |
0.262 |
<0.001 |
-0.074 |
0.890 |
0.252 |
0.002 |
|
|
West |
41 |
12 |
IBR |
TREE_1_2 |
0.323 |
<0.001 |
0.352 |
<0.001 |
-0.041 |
0.690 |
0.153 |
0.030 |
SPP |
ALL |
Study |
53 |
19 |
- |
- |
-0.020 |
0.616 |
-0.019 |
0.575 |
|
|
|
|
East |
44 |
12 |
- |
- |
-0.060 |
0.930 |
-0.074 |
0.938 |
|
|
|
|
||
West |
8 |
6 |
- |
- |
0.173 |
0.168 |
0.212 |
0.196 |
|
|
|
|
||
|
F |
Study |
23 |
13 |
- |
- |
0.021 |
0.424 |
0.091 |
0.253 |
|
|
|
|
|
|
East |
18 |
8 |
- |
- |
-0.048 |
0.663 |
0.075 |
0.304 |
|
|
|
|
|
M |
Study |
30 |
15 |
- |
- |
-0.049 |
0.690 |
-0.043 |
0.622 |
|
|
|
|
|
|
East |
26 |
11 |
- |
- |
-0.063 |
0.798 |
-0.079 |
0.804 |
|
|
|
|
STP |
ALL |
Study |
72 |
26 |
- |
- |
-0.057 |
0.921 |
0.064 |
0.154 |
|
|
|
|
East |
43 |
15 |
- |
- |
0.001 |
0.474 |
0.059 |
0.227 |
|
|
|
|
||
West |
13 |
8 |
- |
- |
-0.025 |
0.601 |
0.138 |
0.234 |
|
|
|
|
||
|
F |
Study |
31 |
18 |
- |
- |
-0.071 |
0.825 |
0.116 |
0.123 |
|
|
|
|
|
|
East |
18 |
11 |
- |
- |
-0.109 |
0.856 |
-0.053 |
0.747 |
|
|
|
|
|
|
West |
7 |
5 |
- |
- |
0.074 |
0.369 |
0.135 |
0.33 |
|
|
|
|
|
M |
Study |
41 |
21 |
- |
- |
0.024 |
0.320 |
0.074 |
0.148 |
|
|
|
|
|
|
East |
25 |
12 |
IBD/R |
IBD/TREE_1_2 |
0.137 |
0.007 |
0.126 |
0.038 |
0.056 |
0.326 |
-0.013 |
0.539 |
|
|
West |
6 |
6 |
- |
- |
0.024 |
0.436 |
0.027 |
0.462 |
|
|
|
|
WB |
ALL |
Study |
74 |
24 |
- |
- |
0.013 |
0.297 |
0.007 |
0.379 |
|
|
|
|
East |
42 |
13 |
- |
- |
-0.051 |
0.785 |
0.024 |
0.305 |
|
|
|
|
||
West |
26 |
9 |
- |
- |
-0.024 |
0.625 |
-0.046 |
0.741 |
|
|
|
|
||
|
F |
Study |
26 |
15 |
- |
- |
-0.102 |
0.969 |
-0.058 |
0.750 |
|
|
|
|
|
|
East |
14 |
8 |
- |
- |
-0.311 |
0.981 |
-0.174 |
0.974 |
|
|
|
|
|
|
West |
10 |
5 |
- |
- |
-0.194 |
0.842 |
-0.185 |
0.694 |
|
|
|
|
|
M |
Study |
48 |
22 |
- |
- |
0.051 |
0.088 |
0.039 |
0.144 |
|
|
|
|
|
|
East |
28 |
12 |
- |
- |
-0.007 |
0.547 |
0.052 |
0.231 |
|
|
|
|
|
|
West |
16 |
8 |
- |
- |
-0.030 |
0.618 |
-0.070 |
0.741 |
|
|
|
|
WPH |
ALL |
Study |
275 |
39 |
- |
- |
0.000 |
0.488 |
-0.011 |
0.687 |
|
|
|
|
East |
76 |
13 |
- |
- |
0.025 |
0.202 |
0.025 |
0.209 |
|
|
|
|
||
West |
192 |
25 |
IBD |
IBD |
0.037 |
0.004 |
0.015 |
0.237 |
0.055 |
0.081 |
-0.043 |
0.848 |
||
|
F |
Study |
70 |
29 |
- |
- |
-0.015 |
0.636 |
0.021 |
0.372 |
|
|
|
|
|
|
East |
19 |
8 |
- |
- |
0.049 |
0.308 |
0.051 |
0.284 |
|
|
|
|
|
|
West |
50 |
20 |
- |
- |
0.029 |
0.216 |
0.105 |
0.091 |
|
|
|
|
|
M |
Study |
205 |
34 |
- |
- |
0.010 |
0.302 |
-0.004 |
0.562 |
|
|
|
|
|
|
East |
57 |
11 |
- |
- |
0.014 |
0.334 |
0.011 |
0.375 |
|
|
|
|
|
|
West |
142 |
22 |
IBD |
IBD |
0.039 |
0.012 |
0.006 |
0.400 |
0.081 |
0.039 |
-0.071 |
0.927 |
YTH |
ALL |
Study |
471 |
33 |
IBR |
TREE_1_100 |
0.016 |
0.140 |
0.045 |
0.030 |
-0.019 |
0.843 |
0.047 |
0.045 |
East |
86 |
10 |
IBD/R |
IBD/HAB_1_10 |
0.049 |
0.014 |
0.042 |
0.046 |
0.027 |
0.319 |
-0.013 |
0.575 |
||
West |
375 |
22 |
IBR |
TREE_1_100 |
0.019 |
0.010 |
0.059 |
0.021 |
-0.013 |
0.796 |
0.058 |
0.034 |
||
|
F |
Study |
174 |
30 |
- |
- |
0.022 |
0.199 |
0.054 |
0.083 |
|
|
|
|
|
|
East |
37 |
8 |
IBD |
IBD |
0.095 |
0.029 |
0.072 |
0.056 |
0.197 |
0.022 |
-0.187 |
0.976 |
|
|
West |
136 |
21 |
IBR |
TREE_1_2 |
0.031 |
0.064 |
0.050 |
0.034 |
-0.006 |
0.885 |
0.070 |
0.094 |
|
M |
Study |
297 |
32 |
- |
- |
0.023 |
0.113 |
0.045 |
0.067 |
|
|
|
|
|
|
East |
49 |
9 |
IBD/R |
IBD/HAB_1_10 |
0.063 |
0.039 |
0.077 |
0.025 |
-0.032 |
0.676 |
0.055 |
0.235 |
|
|
West |
239 |
22 |
IBD/R |
IBD/TREE_1_100 |
0.023 |
0.003 |
0.050 |
0.046 |
-0.007 |
0.634 |
0.053 |
0.093 |